“The Mic-Drop platform we’re developing makes it possible to reduce reagent use 100 000-fold to allow screens with more biologically relevant cells that are rare or expensive, which also results in one million-fold less liquid waste,” says Ken Yamada. “Whereas a typical biological screen against a million compounds uses approximately 1000 plastic screening plates, we can do the same screen in just one chip that fits in the palm of your hand.”
In theory, Yamada and Siuti knew that microfluidics could potentially make it possible to store and measure billions of microscopic droplets – each containing a unique experiment – in a total volume of just a few milliliters. The droplets could be created and kept separate from each other by using a solution of oil. This ability to mix the droplets together would also be the key to screening faster.
As they developed their proposal, Yamada and Siuti were joined by over a dozen colleagues in Basel, Cambridge and at the Genomics Institute of the Novartis Research Foundation, which had related side projects. They had all seen potential synergies with microfluidic technologies, but none of them had ever been able to dedicate more than a few spare moments to their ideas.
“It was interesting to find out that there were people around Novartis who were interested in these approaches and who had been working on them on the side,” says Siuti. “But nothing was organized until the Genesis Labs project – that was what ignited it and put it all together.” The cross-functional team thus formed taps into the vast diversity of expertise available at Novartis, from engineering to chemistry, biology, informatics and analytical sciences.
In addition to microfluidics, a central component of the Mic-Drop concept is an effective method for identifying droplets of interest after millions of droplets have been mixed together. During the biological measurement, only a few molecules – and therefore a few droplets – show activity, for example by lighting up with fluorescence. Droplets that light up can thus be sorted from those that do not. The team then uses a unique barcoding strategy to identify the molecules in the illuminated droplets.
“When we started out, we were wondering if we could actually do this, but with the team fully equipped with the right talents and resources to realize this dream platform, we’ve been able to prove that it’s definitely feasible,” says Yamada. “We’ve validated all of the individual pieces and now we just need to put them all together.”
Moving towards efficiency and sustainability
As of early 2020, the Mic-Drop prototype has reduced waste and resource use just as much as anticipated. The platform is on track to perform previously week-long screens in only a few hours. Like Micro-Cycle, the Mic-Drop team hopes that their platform will become an official ongoing Novartis project as well.
“We want to make the Mic-Drop platform as broadly applicable as possible,” says Piro Siuti. “The Genesis Labs program has broadened our audience and we have many people contacting us now to collaborate.” Ken Yamada adds that interest is now so big, “we have to prioritize which projects to start with.”
Meanwhile, the MicroCycle team has since created two platforms – one for each of the Basel and Cambridge campuses. Each lab contains all of the instrumentation needed for the complete workflow, as well as experts for each step of the process. “MicroCycle isn’t a replacement for existing approaches, but it offers a new tool in addition to the big toolkit that’s available for drug hunters in this organization,” says Alexander Marziale. “We’re also continuously improving the platform, adding new components and deepening our collaborations with project teams.”
The MicroCycle team sees potential for improving the sustainability of the platform too. “So far, we’ve only gone down 100-fold in scale,” says Jonathan Grob. “There’s still a 200-fold opportunity to go further.”
While highly impactful, both Mic-Drop and MicroCycle are active in niche areas so far. But further innovations are already underway to expand the chemical and assay space for both MicroCycle and Mic-Drop to deepen their impact across the research portfolio of Novartis.
